doctor

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• SKILL.md

SKILL.md (first lines)

# Doctor Skill

Note: All `~/.claude/...` paths in this guide respect `CLAUDE_CONFIG_DIR` when that environment variable is set.

## Task: Run Installation Diagnostics

You are the PEP Doctor - diagnose and fix installation issues.

### Step 1: Check Plugin Version

```bash
# Get installed version
INSTALLED=$(ls ~/.claude/plugins/cache/pep/pepcode/ 2>/dev/null | sort -V | tail -1)
echo "Installed: $INSTALLED"

# Get latest from npm
LATEST=$(npm view pepcode version 2>/dev/null)
echo "Latest: $LATEST"
```

**Diagnosis**:
- If no version installed: CRITICAL - plugin not installed
- If INSTALLED != LATEST: WARN - outdated plugin
- If multiple versions exist: WARN - stale cache

### Step 2: Check for Legacy Hooks in settings.json

Read `~/.claude/settings.json` and check if there's a `"hooks"` key with entries like:
- `bash $HOME/.claude/hooks/keyword-detector.sh`
- `bash $HOME/.claude/hooks/persistent-mode.sh`
- `bash $HOME/.claude/hooks/session-start.sh`

**Diagnosis**:
- If found: CRITICAL - legacy hooks causing duplicates

### Step 3: Check for Legacy Bash Hook Scripts

```bash
ls -la ~/.claude/hooks/*.sh 2>/dev/null
```

**Diagnosis**:
- If `keyword-detector.sh`, `persistent-mode.sh`, `session-start.sh`, or `stop-continuation.sh` exist: WARN - legacy scripts (can cause confusion)

### Step 4: Check CLAUDE.md

```bash
# Check if CLAUDE.md exists
ls -la ~/.claude/CLAUDE.md 2>/dev/null

# Check for PEP marker
grep -q "pepcode Multi-Agent System" ~/.claude/CLAUDE.md 2>/dev/null && echo "Has PEP config" || echo "Missing PEP config"
```

**Diagnosis**:
- If missing: CRITICAL - CLAUDE.md not configured
- If missing PEP marker: WARN - outdated CLAUDE.md

### Step 5: Check for Stale Plugin Cache

```bash
# Count versions in cache
ls ~/.claude/plugins/cache/pep/pepcode/ 2>/dev/null | wc -l
```

**Diagnosis**:
- If > 1 version: WARN - multiple cached versions (cleanup recommended)

### Step 6: Check for Legacy Curl-Installed Content

Check for legacy agents, commands, and skills installed via curl (before plugin system):

```bash
# Check for legacy agents directory
ls -la ~/.claude/agents/ 2>/dev/null

# Check for legacy commands directory
ls -la ~/.claude/commands/ 2>/dev/null

# Check for legacy skills directory
ls -la ~/.claude/skills/ 2>/dev/null
```

**Diagnosis**:
- If `~/.claude/agents/` exists with pepcode-related files: WARN - legacy agents (now provided by plugin)
- If `~/.claude/commands/` exists with pepcode-related files: WARN - legacy commands (now provided by plugin)
- If `~/.claude/skills/` exists with pepcode-related files: WARN - legacy skills (now provided by plugin)

Look for files like:
- `architect.md`, `researcher.md`, `explore.md`, `executor.md`, etc. in agents/
- `ultrawork.md`, `deepsearch.md`, etc. in commands/
- Any pepcode-related `.md` files in skills/

---

## Report Format

After running all checks, output a report:

```
## PEP Doctor Report

### Summary
[HEALTHY / ISSUES FOUND]

### Checks

| Check | Status | Details |
|-------|--------|---------|
| Plugin Version | OK/WARN/CRITICAL | ... |
| Legacy Hooks (settings.json) | OK/CRITICAL | ... |
| Legacy Scripts (~/.claude/hooks/) | OK/WARN | ... |
| CLAUDE.md | OK/WARN/CRITICAL | ... |
| Plugin Cache | OK/WARN | ... |
| Legacy Agents (~/.claude/agents/) | OK/WARN | ... |
| Legacy Commands (~/.claude/commands/) | OK/WARN | ... |
| Legacy Skills (~/.claude/skills/) | OK/WARN | ... |

### Issues Found

From leejaedus/pepcode, MIT.

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