chembl-bioactivity
Review source-linked ChEMBL small-molecule activity evidence for an exact UniProt single-protein target.
Skill by phenixace
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/phenixace-chembl-bioactivity
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: sales
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/chembl-bioactivity
What's inside
- Skill name
chembl-bioactivity- Description
- Review source-linked ChEMBL small-molecule activity evidence for an exact UniProt single-protein target. Use for target-to-ligand bioactivity questions, medicinal-chemistry starting points, assay-context review, and bounded SAR evidence; do not turn pChEMBL into a lead-quality, selectivity, safety, or efficacy score.
- License
- MIT
- Instructions
- 9 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (3)
- SKILL.md
- handler.py · scripts/
- skill.json
SKILL.md (first lines)
# ChEMBL Bioactivity Evidence Use `chembl_bioactivity_preflight` to resolve the target and inspect a bounded preview. Full collection uses `chembl_bioactivity_collect` only through a researcher-approved `target-ligand-bioactivity-review` workflow. The review retains only ChEMBL assay-to-target confidence score 9 with direct relationship type `D`, standardized activity rows, non-duplicate records without data-validity comments, and a canonical small-molecule structure. Preserve pChEMBL, endpoint type, relation, value, unit, BAO format, assay description, document, and ChEMBL identifiers. Confidence score 9 supports direct single-protein target assignment; it does not prove direct physical binding or assay quality. Binding-class assays can still be cell-based. Do not directly compare mixed IC50, Ki, Kd, EC50, assay formats, variants, constructs, or organisms without reviewing their context. A high pChEMBL row is not evidence of selectivity, developability, safety, mechanism, or clinical efficacy.
From phenixace/Molemo_WorkBench, MIT.
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Search one concrete protein or nucleotide sequence against a FASTA database inside the local Molemo workspace with NCBI BLAST+.
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single-cell-analysis
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clinical-trial-landscape
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Search ClinicalTrials.gov for a bounded trial landscape or review the posted tabular results of one exact NCT record.
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dna-variant-calling
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functional-analysis
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Signals
- Stars
- 2
- Forks
- 0
- Open issues
- 0
- Last commit (this folder)
- Aug 29, 2026 (2 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- MIT
- Repository
- github.com/phenixace/Molemo_WorkBench
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
More from phenixace
- 0.557score
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phenixace
Route broad life-science research questions to the smallest useful set of Molemo skills.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
guided-workflows
phenixace
Create reviewable, researcher-approved plans from Molemo scientific tools.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
hmmer-profile-search
phenixace
Validate and run bounded local HMMER3 profile-to-protein searches with domain coordinates, explicit thresholds, researcher approval and auditable outputs.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
protein-structure
phenixace
Retrieve experimental structures from RCSB PDB, predicted structures from AlphaFold DB, or parse PDB/mmCIF files in the local workspace.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
scientific-visualization
phenixace
Turn molecular and protein analysis results into declarative property charts and residue-level sequence tracks.
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public-databases
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Retrieve named compounds from PubChem and protein records from UniProt using fixed official API hosts.
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Cite this page
chembl-bioactivity skill. Agent Mart. https://agentmart.dev/skills/phenixace-chembl-bioactivity (last updated 2026-10-24)