biopython
Comprehensive molecular biology toolkit.
Skill by tassiovale
Chalk Labs
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/tassiovale-biopython
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About
Reviews
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What's inside
- Skill name
biopython- Description
- Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
- License
- Biopython License Agreement
- Compatibility
- Requires Python 3.10+, NumPy, and Biopython. Entrez and web BLAST examples require network access; local BLAST/MUSCLE examples require those command-line tools installed separately.
- Allowed tools
- Read, Write, Edit, Bash
- Metadata
- version: 1.1 · skill-author: K-Dense Inc.
- Instructions
- 455 lines in SKILL.md · view on GitHub
Before installing
- Pre-approves any shell command
- Instructions call the network
Files (8)
- SKILL.md
- advanced.md · references/
- alignment.md · references/
- blast.md · references/
- databases.md · references/
- phylogenetics.md · references/
- sequence_io.md · references/
- structure.md · references/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
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Signals
- Stars
- 12
- Forks
- 4
- Open issues
- 0
- Last commit (this folder)
- Jun 10, 2026 (4 months ago)
- Last release
- Jul 26, 2026 (3 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- Version
- 1.1
- License
- Biopython License Agreement
- Repository
- github.com/tassiovale/claude-code-kit
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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biopython skill. Agent Mart. https://agentmart.dev/skills/tassiovale-biopython (last updated 2026-10-24)